Example Index¶

This generated index groups runnable examples by backend and workflow and extracts a short summary from each example when available.

Live Simulation Backends¶

C. elegans morphology visualizer: loads a directory of multi-tree SWC files as a single session. python examples/neuron/c_elegans_visualizer.py (examples/neuron/c_elegans_visualizer.py)
Complex cell visualizer: minimal example of a single-cell live session loaded from an SWC file. python examples/neuron/complex_cell_example.py (examples/neuron/complex_cell_example.py)
HH section inspector: simple NEURON morphology with section-linked voltage, gating, and input-current plots. python examples/neuron/hh_section_inspector.py (examples/neuron/hh_section_inspector.py)
Multi-cell network visualizer: three procedurally-built cells connected by synapses. python examples/neuron/multicell_example.py (examples/neuron/multicell_example.py)

Multi-cell Jaxley visualizer: three procedurally-built cells connected by synapses. python examples/jaxley/multicell_example.py (examples/jaxley/multicell_example.py)

Custom FitzHugh-Nagumo backend: complete example of a pure BufferedSession backend with its own fixed-step RK4 solver, explicit scene assembly, and bound controls/actions. No NEURON or Jaxley helper is involved. python examples/custom/fitzhugh_nagumo_backend.py (examples/custom/fitzhugh_nagumo_backend.py)

Static surface visualizer: renders a 3-D surface from a 2-D height field with interactive axes and appearance controls. No simulation or session is involved; the surface is computed once at startup and the UI controls update only the visual properties (colors, transparency, axis style). python examples/surface_plot/static_surface_visualizer.py (examples/surface_plot/static_surface_visualizer.py)
Surface cross-section visualizer: renders a 3-D height field with a moveable cutting plane and a linked line plot showing the curve along that slice. Two controls let you choose the slice axis (x or y) and drag the cutting position; both the surface overlay and the line plot update together in real time. No simulation or session is involved. python examples/surface_plot/surface_cross_section_visualizer.py (examples/surface_plot/surface_cross_section_visualizer.py)

Animated surface: live computation approach. Renders the same radially-expanding sinc wave as animated_surface_replay.py, but computes each frame on demand inside advance() rather than pre-computing them all at startup. A speed control changes the wave propagation rate in real time. python examples/surface_plot/animated_surface_live.py (examples/surface_plot/animated_surface_live.py)

Animated surface: replay approach. Renders a radially-expanding sinc wave by cycling through a pre-computed list of frames. Each step the session emits a FieldReplace with the next frame's values; the surface updates in place without rebuilding geometry or axes. python examples/surface_plot/animated_surface_replay.py (examples/surface_plot/animated_surface_replay.py)

Multi 3D Views: Debug-oriented example for probing layout, session, or rendering behavior. python examples/debug/multi_3d_views.py (examples/debug/multi_3d_views.py)
Session Error After Open: Debug-oriented example for probing layout, session, or rendering behavior. python examples/debug/session_error_after_open.py (examples/debug/session_error_after_open.py)
Two Line Plots: debug-oriented example that renders two live line plots at once with no 3-D host. python examples/debug/two_line_plots.py (examples/debug/two_line_plots.py)
Two Morphology Views: Debug-oriented example for probing layout, session, or rendering behavior. python examples/debug/two_morphology_views.py (examples/debug/two_morphology_views.py)